MolNFT v1 · #94850 · protein

Crystal structure of wild type HIV-1 protease in complex with non- peptidic inhibitor, GRL008

4I8Z: “Crystal structure of wild type HIV-1 protease in complex with non- peptidic inhibitor, GRL008”. X-ray diffraction, 1 ligand (G08), 1 pocket (best druggability 0.72). MolNFT v1 #94850 on GenesisL1: 3D structure, binding sites and…

PDB: 4I8Z
Type: protein
Length: 198 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protease
EC: 3.4.23.16
UniProt: P0C6F2
Ligands: G08
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protease (EC 3.4.23.16)	protein	99	4% helix, 55% strand	P0C6F2

Ligands and binding sites

G08 · (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{[(4-carbamoylphenyl)sulfonyl](2-methylpropyl)amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate · ligand · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	400	0.72	0.83	37	G08

Interfaces

1 interface between chains.

A–B · 1861 Å² buried · 39 hydrogen bonds · protein-protein

Compared structures

4I8Z · Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0C6F2
Elsewhere: RCSB PDB 4I8Z · PDBe 4I8Z · UniProt P0C6F2

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