MolNFT v1 · #94600 · protein
Crystal structure of VRN1 (residues 208-341)
4I1K · B3 domain-containing transcription factor VRN1: “Crystal structure of VRN1 (residues 208-341)”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.58). MolNFT v1 #94600 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4I1K
- Type
- protein
- Length
- 236 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B3 domain-containing transcription factor VRN1
- UniProt
- Q8L3W1
- Ligands
- CL
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | B3 domain-containing transcription factor VRN1 | protein | 118 | 25% helix, 34% strand | Q8L3W1 |
Ligands and binding sites
- CL · Chloride ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 370 | 0.58 | 0.75 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 506 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8L3W1
- Elsewhere: RCSB PDB 4I1K · PDBe 4I1K · UniProt Q8L3W1
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