MolNFT v1 · #94433 · protein

Crystal structure of a lipoprotein yedd (KPN_02420) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.38 a resolution

4HWM · Uncharacterized protein yedd: “Crystal structure of a lipoprotein yedd (KPN_02420) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at…”. X-ray diffraction, 2 pockets (best druggability 0.28). MolNFT v1 #94433 on GenesisL1: 3D…

PDB: 4HWM
Type: protein
Length: 117 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein yedd
UniProt: A6TB72
Pockets: 2 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein yedd	protein	117	12% helix, 44% strand	A6TB72

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.28	0.75	12	empty
2	60	0.27	0.73	16	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

4HWM · Crystal structure of a lipoprotein YedD (KPN_02420) from Klebsiella pneumoniae subsp.… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6TB72
Elsewhere: RCSB PDB 4HWM · PDBe 4HWM · UniProt A6TB72

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