MolNFT v1 · #93926 · protein

Crystal structure of chemically synthesized scorpion alpha-toxin OD1

4HHF: “Crystal structure of chemically synthesized scorpion alpha-toxin OD1”. X-ray diffraction, 1 ligand (NH2). MolNFT v1 #93926 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4HHF
Type: protein
Length: 65 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-toxin OD1
UniProt: P84646
Ligands: NH2

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alpha-toxin OD1	protein	65	20% helix, 38% strand	P84646

Ligands and binding sites

NH2 · Amino group · ion · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

4HHF · Crystal Structure of chemically synthesized scorpion alpha-toxin OD1 · the same entry in another collection · chain A against A, TM-score 1.00
P84646 · AlphaFold monomer V2.0 prediction for alpha-toxin OD1 (P84646) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P84646
Elsewhere: RCSB PDB 4HHF · PDBe 4HHF · UniProt P84646

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