MolNFT v1 · #93874 · protein
Crystal structure of an uncharacterized protein (yncm) from bacillus subtilis subsp. subtilis str. 168 at 1.55 a resolution
4HFS · Uncharacterized protein yncm: “Crystal structure of an uncharacterized protein (yncm) from bacillus subtilis subsp. subtilis str. 168 at…”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.71). MolNFT v1 #93874 on…
- PDB
- 4HFS
- Type
- protein
- Length
- 406 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein yncm
- UniProt
- O31803
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein yncm | protein | 203 | 5% helix, 59% strand | O31803 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 486 | 0.71 | 0.81 | 60 | SO4 |
| 2 | 236 | 0.61 | 0.81 | 27 | SO4 |
| 3 | 229 | 0.60 | 0.81 | 28 | SO4 |
Interfaces
1 interface between chains.
- A–B · 836 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 4HFS · Crystal structure of an uncharacterized protein (yncM) from Bacillus subtilis subsp.… · the same entry in another collection · chain A against A, TM-score 1.00
- O31803 · AlphaFold monomer V2.0 prediction for uncharacterized protein yncm (O31803) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31803
- Elsewhere: RCSB PDB 4HFS · PDBe 4HFS · UniProt O31803
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