MolNFT v1 · #93834 · protein

2A X-ray structure of hpf from vibrio cholerae

4HEI · Ribosome hibernation protein yhbh: “2A X-ray structure of hpf from vibrio cholerae”. X-ray diffraction, 3 ligands (3CO, UNL, SCN), 1 pocket (best druggability 0.38). MolNFT v1 #93834 on GenesisL1: 3D structure, binding sites and…

PDB: 4HEI
Type: protein
Length: 183 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribosome hibernation protein yhbh
UniProt: H9L4N9
Ligands: 3CO, UNL, SCN
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribosome hibernation protein yhbh	protein	92	39% helix, 40% strand	H9L4N9
B	Ribosome hibernation protein yhbh	protein	91	41% helix, 38% strand	H9L4N9

Ligands and binding sites

3CO · Cobalt (III) ion · metal · 4 copies · chains A, B
UNL · Unknown ligand · ion · 7 copies · chains A, B
SCN · Thiocyanate ion · ion · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.38	0.80	16	SCN

Interfaces

1 interface between chains.

A–B · 663 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

4HEI · 2A X-RAY STRUCTURE OF HPF from VIBRIO CHOLERAE · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt H9L4N9
Elsewhere: RCSB PDB 4HEI · PDBe 4HEI · UniProt H9L4N9

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