MolNFT v1 · #93745 · protein
Crystal structure of a putative periplasmic proteins (BACEGG_01429) from bacteroides eggerthii dsm 20697 at 2.40 a resolution
4HBR: “Crystal structure of a putative periplasmic proteins (BACEGG_01429) from bacteroides eggerthii dsm 20697 at…”. X-ray diffraction, 7 pockets (best druggability 0.86). MolNFT v1 #93745 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4HBR
- Type
- protein
- Length
- 559 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative periplasmic protein
- UniProt
- B7AGA3
- Pockets
- 7 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Putative periplasmic protein | protein | 140 | 19% helix, 41% strand | B7AGA3 |
| D | Putative periplasmic protein | protein | 139 | 19% helix, 41% strand | B7AGA3 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1094 | 0.86 | 0.87 | 119 | empty |
| 2 | 153 | 0.48 | 0.77 | 23 | empty |
| 3 | 137 | 0.45 | 0.76 | 21 | empty |
| 4 | 102 | 0.38 | 0.75 | 19 | empty |
| 5 | 109 | 0.38 | 0.74 | 16 | empty |
Interfaces
6 interfaces between chains.
- A–D · 913 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 859 Ų buried · 12 hydrogen bonds · protein-protein
- B–D · 460 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 164 Ų buried · 1 hydrogen bond · protein-protein
- C–D · 161 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 20 modified (engineered).
Compared structures
- 4HBR · Crystal structure of a putative periplasmic proteins (BACEGG_01429) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7AGA3
- Elsewhere: RCSB PDB 4HBR · PDBe 4HBR · UniProt B7AGA3
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