MolNFT v1 · #93700 · protein
Structure of the salmonella plasmid virulence C protein (spvc)
4HAH · 27.5 kda virulence protein: “Structure of the salmonella plasmid virulence C protein (spvc)”. X-ray diffraction, 2 pockets (best druggability 0.75). MolNFT v1 #93700 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4HAH
- Type
- protein
- Length
- 430 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 27.5 kda virulence protein
- UniProt
- P0A2M9
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 27.5 kda virulence protein | protein | 215 | 37% helix, 17% strand | P0A2M9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 872 | 0.75 | 0.79 | 72 | empty |
| 2 | 69 | 0.36 | 0.78 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1239 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 4HAH · Structure of the Salmonella plasmid virulence C protein (SpvC) · the same entry in another collection · chain A against A, TM-score 1.00
- P0A2M9 · AlphaFold monomer V2.0 prediction for MAPK phosphothreonine lyase (P0A2M9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A2M9
- Elsewhere: RCSB PDB 4HAH · PDBe 4HAH · UniProt P0A2M9
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