MolNFT v1 · #93531 · protein
Crystal structure of the clostridium perfringens netb toxin in the membrane inserted form
4H56 · Necrotic enteritis toxin B: “Crystal structure of the clostridium perfringens netb toxin in the membrane inserted form”. X-ray diffraction, 20 pockets (best druggability 0.70). MolNFT v1 #93531 on GenesisL1: 3D structure, binding…
- PDB
- 4H56
- Type
- protein
- Length
- 3,738 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Necrotic enteritis toxin B
- UniProt
- A8ULG6
- Pockets
- 20 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 60% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | Necrotic enteritis toxin B | protein | 267 | 3% helix, 60% strand | A8ULG6 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 764 | 0.70 | 0.77 | 78 | empty |
| 2 | 776 | 0.70 | 0.76 | 75 | empty |
| 3 | 519 | 0.67 | 0.78 | 58 | empty |
| 4 | 378 | 0.63 | 0.78 | 47 | empty |
| 5 | 435 | 0.62 | 0.76 | 47 | empty |
Interfaces
17 interfaces between chains.
- K–L · 2293 Ų buried · 53 hydrogen bonds · protein-protein
- H–I · 2224 Ų buried · 53 hydrogen bonds · protein-protein
- I–J · 2221 Ų buried · 56 hydrogen bonds · protein-protein
- A–G · 2209 Ų buried · 50 hydrogen bonds · protein-protein
- J–K · 2208 Ų buried · 49 hydrogen bonds · protein-protein
Compared structures
- 4H56 · Crystal structure of the Clostridium perfringens NetB toxin in the membrane inserted form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8ULG6
- Elsewhere: RCSB PDB 4H56 · PDBe 4H56 · UniProt A8ULG6
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