MolNFT v1 · #93478 · protein
MPLUMAYC
4H3N · Fluorescent protein plum: “MPLUMAYC”. X-ray diffraction, 2 ligands (NRQ, CL), 2 pockets (best druggability 0.75). MolNFT v1 #93478 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4H3N
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluorescent protein plum
- UniProt
- Q5S3G7
- Ligands
- NRQ, CL
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluorescent protein plum | protein | 213 | 3% helix, 58% strand | Q5S3G7 |
Ligands and binding sites
- NRQ · {(4Z)-4-(4-hydroxybenzylidene)-2-[3-(methylthio) propanimidoyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.75 | 0.98 | 25 | NRQ |
| 2 | 56 | 0.35 | 0.79 | 19 | empty |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 4H3N · mPlumAYC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5S3G7
- Elsewhere: RCSB PDB 4H3N · PDBe 4H3N · UniProt Q5S3G7
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