MolNFT v1 · #93395 · protein
Crystal structure of bovine coronavirus spike protein lectin domain
4H14 · Spike glycoprotein: “Crystal structure of bovine coronavirus spike protein lectin domain”. X-ray diffraction, 2 ligands (NAG, SO4), 1 pocket (best druggability 0.42). MolNFT v1 #93395 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4H14
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike glycoprotein
- UniProt
- Q1HLC5
- Ligands
- NAG, SO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spike glycoprotein | protein | 287 | 5% helix, 46% strand | Q1HLC5 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.42 | 0.82 | 17 | empty |
Modifications
Observed in the structure: 4 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
- 4H14 · Crystal Structure of Bovine Coronavirus Spike Protein Lectin Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1HLC5
- Elsewhere: RCSB PDB 4H14 · PDBe 4H14 · UniProt Q1HLC5
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