MolNFT v1 · #93116 · protein
Crystal structure of ubiquitin from entamoeba histolytica to 2.15 ångström
4GSW: “Crystal structure of ubiquitin from entamoeba histolytica to 2.15 ångström”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.45). MolNFT v1 #93116 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4GSW
- Type
- protein
- Length
- 147 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin
- UniProt
- C4M760
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin | protein | 74 | 26% helix, 38% strand | C4M760 |
| B | Ubiquitin | protein | 73 | 26% helix, 34% strand | C4M760 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.45 | 0.81 | 21 | empty |
| 2 | 69 | 0.35 | 0.77 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 445 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4GSW · Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4M760
- Elsewhere: RCSB PDB 4GSW · PDBe 4GSW · UniProt C4M760
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.