MolNFT v1 · #93108 · protein

Structure of jararacussin-I

4GSO · Thrombin-like enzyme bjussusp-1: “Structure of jararacussin-I”. X-ray diffraction, 2 pockets (best druggability 0.40). MolNFT v1 #93108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4GSO
Type: protein
Length: 232 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thrombin-like enzyme bjussusp-1
EC: 3.4.21.-
UniProt: Q2PQJ3
Pockets: 2 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thrombin-like enzyme bjussusp-1 (EC 3.4.21.-)	protein	232	9% helix, 34% strand	Q2PQJ3

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.40	0.77	19	empty
2	70	0.34	0.77	19	empty

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

4GSO · structure of Jararacussin-I · the same entry in another collection · chain A against A, TM-score 1.00
Q2PQJ3 · AlphaFold monomer V2.0 prediction for thrombin-like enzyme bjussusp-1 (Q2PQJ3) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2PQJ3
Elsewhere: RCSB PDB 4GSO · PDBe 4GSO · UniProt Q2PQJ3

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