MolNFT v1 · #92830 · protein
Crystal structure of a noncanonic maltogenic alpha-amylase amyb from thermotoga neapolitana
4GKL: “Crystal structure of a noncanonic maltogenic alpha-amylase amyb from thermotoga neapolitana”. X-ray diffraction, 7 pockets (best druggability 0.53). MolNFT v1 #92830 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4GKL
- Type
- protein
- Length
- 839 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-amylase
- EC
- 3.2.1.1
- UniProt
- B5ARZ9
- Pockets
- 7 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-amylase (EC 3.2.1.1) | protein | 420 | 33% helix, 23% strand | B5ARZ9 |
| B | Alpha-amylase (EC 3.2.1.1) | protein | 419 | 33% helix, 23% strand | B5ARZ9 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.53 | 0.82 | 20 | empty |
| 2 | 173 | 0.43 | 0.74 | 27 | empty |
| 3 | 96 | 0.40 | 0.77 | 20 | empty |
| 4 | 118 | 0.39 | 0.75 | 28 | empty |
| 5 | 66 | 0.34 | 0.76 | 15 | empty |
Compared structures
- 4GKL · Crystal structure of a noncanonic maltogenic alpha-amylase AmyB from Thermotoga… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5ARZ9
- Elsewhere: RCSB PDB 4GKL · PDBe 4GKL · UniProt B5ARZ9
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