MolNFT v1 · #92657 · protein
Low pH structure of pseudomonas putida oprb
4GF4 · Porin B: “Low pH structure of pseudomonas putida oprb”. X-ray diffraction, 3 pockets (best druggability 0.56). MolNFT v1 #92657 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4GF4
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Porin B
- UniProt
- E4R6F8
- Pockets
- 3 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 65% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Porin B | protein | 299 | 6% helix, 65% strand | E4R6F8 |
Ligands and binding sites
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.56 | 0.75 | 45 | empty |
| 2 | 98 | 0.38 | 0.76 | 23 | empty |
| 3 | 74 | 0.30 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 4GF4 · Low pH structure of Pseudomonas putida OprB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E4R6F8
- Elsewhere: RCSB PDB 4GF4 · PDBe 4GF4 · UniProt E4R6F8
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