MolNFT v1 · #92651 · protein

High pH structure of pseudomonas putida oprb

4GEY · Porin B: “High pH structure of pseudomonas putida oprb”. X-ray diffraction, 2 ligands (BGC, PO4), 1 pocket (best druggability 0.72). MolNFT v1 #92651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4GEY
Type: protein
Length: 420 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Porin B
UniProt: E4R6F8
Ligands: BGC, PO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Porin B	protein	420	14% helix, 48% strand	E4R6F8

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · chains A
PO4 · Phosphate ion · ion · chains A
C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 8 copies · chains A
DMU · Decyl-beta-D-maltopyranoside · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1016	0.72	0.76	118	BGC

Modifications

Observed in the structure: 4 modified, 1 disulfide (engineered, disulfide).

Compared structures

4GEY · High pH structure of Pseudomonas putida OprB · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E4R6F8
Elsewhere: RCSB PDB 4GEY · PDBe 4GEY · UniProt E4R6F8

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