MolNFT v1 · #92627 · protein
OYE1-W116I complexed with (S)-carvone
4GE8 · NADPH dehydrogenase 1: “OYE1-W116I complexed with (S)-carvone”. X-ray diffraction, 5 ligands (FMN, 0WU, NA), 1 pocket (best druggability 0.79). MolNFT v1 #92627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4GE8
- Type
- protein
- Length
- 399 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADPH dehydrogenase 1
- EC
- 1.6.99.1
- UniProt
- Q02899
- Ligands
- FMN, 0WU, NA, MG, CL
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADPH dehydrogenase 1 (EC 1.6.99.1) | protein | 399 | 38% helix, 14% strand | Q02899 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- 0WU · (5S)-2-methyl-5-(prop-1-en-2-yl)cyclohex-2-en-1-one · ligand · chains A
- NA · Sodium ion · metal · 4 copies · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 3 copies · chains A
- 1PE · Pentaethylene glycol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 350 | 0.79 | 0.89 | 55 | CL, NA, 1PE, FMN, 0WU |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q02899
- Elsewhere: RCSB PDB 4GE8 · PDBe 4GE8 · UniProt Q02899
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