MolNFT v1 · #92555 · protein
Structural characterization of H-1 parvovirus: comparison of infectious virions to replication defective particles
4GBT · Capsid protein VP1: “Structural characterization of H-1 parvovirus: comparison of infectious virions to replication defective…”. X-ray diffraction, 2 ligands (NA, CL), 9 pockets (best druggability 0.59). MolNFT v1 #92555 on…
- PDB
- 4GBT
- Type
- protein
- Length
- 552 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein VP1
- UniProt
- P03136
- Ligands
- NA, CL
- Pockets
- 9 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein VP1 | protein | 552 | 9% helix, 30% strand | P03136 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.59 | 0.80 | 39 | empty |
| 2 | 425 | 0.56 | 0.74 | 33 | empty |
| 3 | 170 | 0.52 | 0.79 | 27 | empty |
| 4 | 225 | 0.50 | 0.75 | 33 | empty |
| 5 | 155 | 0.47 | 0.77 | 37 | empty |
Compared structures
- 4GBT · Structural characterization of H-1 Parvovirus: comparison of infectious virions to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03136
- Elsewhere: RCSB PDB 4GBT · PDBe 4GBT · UniProt P03136
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