MolNFT v1 · #92481 · protein
Crystal structure of beta-phosphoglucomutase homolog from escherichia COLI, target efi-501172, with bound mg, open lid
4G9B: “Crystal structure of beta-phosphoglucomutase homolog from escherichia COLI, target efi-501172, with bound mg…”. X-ray diffraction, 4 ligands (UNL, MG, SO4), 1 pocket (best druggability 0.52). MolNFT v1 #92481 on GenesisL1: 3D…
- PDB
- 4G9B
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-phosphoglucomutase
- EC
- 5.4.2.6
- UniProt
- P77366
- Ligands
- UNL, MG, SO4, CL
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-phosphoglucomutase (EC 5.4.2.6) | protein | 227 | 52% helix, 11% strand | P77366 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 281 | 0.52 | 0.75 | 33 | MG, CL, SO4 |
Compared structures
- 4G9B · Crystal structure of beta-phosphoglucomutase homolog from escherichia coli, target… · the same entry in another collection · chain A against A, TM-score 1.00
- P77366 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P77366) · a predicted model of the same protein · chain A against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77366
- Elsewhere: RCSB PDB 4G9B · PDBe 4G9B · UniProt P77366
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