MolNFT v1 · #92397 · protein
The crystal structure of a functionally unknown protein KFLA_6221 from kribbella flavida dsm 17836
4G6Q · Putative uncharacterized protein: “The crystal structure of a functionally unknown protein KFLA_6221 from kribbella flavida dsm 17836”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.78). MolNFT v1 #92397 on…
- PDB
- 4G6Q
- Type
- protein
- Length
- 345 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- D2PVI4
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 177 | 46% helix, 11% strand | D2PVI4 |
| B | Putative uncharacterized protein | protein | 168 | 48% helix, 12% strand | D2PVI4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 793 | 0.78 | 0.81 | 71 | empty |
| 2 | 766 | 0.76 | 0.80 | 64 | empty |
| 3 | 615 | 0.69 | 0.77 | 44 | empty |
| 4 | 51 | 0.27 | 0.74 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 420 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 4G6Q · The crystal structure of a functionally unknown protein Kfla_6221 from Kribbella flavida… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2PVI4
- Elsewhere: RCSB PDB 4G6Q · PDBe 4G6Q · UniProt D2PVI4
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