MolNFT v1 · #9236 · protein
Crystal structure of the catalytic domain of E.COLI cytotoxic necrotizing factor type 1
1HQ0 · Cytotoxic necrotizing factor 1: “Crystal structure of the catalytic domain of E.COLI cytotoxic necrotizing factor type 1”. X-ray diffraction, 1 ligand (PO4), 2 pockets (best druggability 0.59). MolNFT v1 #9236 on GenesisL1: 3D…
- PDB
- 1HQ0
- Type
- protein
- Length
- 295 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytotoxic necrotizing factor 1
- UniProt
- Q47106
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytotoxic necrotizing factor 1 | protein | 295 | 18% helix, 38% strand | Q47106 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 317 | 0.59 | 0.78 | 52 | PO4 |
| 2 | 61 | 0.32 | 0.76 | 15 | empty |
Compared structures
- 1HQ0 · Crystal structure of the catalytic domain of E.COLI cytotoxic necrotizing factor type 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47106
- Elsewhere: RCSB PDB 1HQ0 · PDBe 1HQ0 · UniProt Q47106
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