MolNFT v1 · #92339 · protein
Structure of the staphylococcus aureus agra lyttr domain
4G4K · Accessory gene regulator protein a: “Structure of the staphylococcus aureus agra lyttr domain”. X-ray diffraction, 1 pocket (best druggability 0.62). MolNFT v1 #92339 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4G4K
- Type
- protein
- Length
- 198 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Accessory gene regulator protein a
- UniProt
- P0A0I7
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Accessory gene regulator protein a | protein | 98 | 14% helix, 46% strand | P0A0I7 |
| B | Accessory gene regulator protein a | protein | 100 | 14% helix, 46% strand | P0A0I7 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 403 | 0.62 | 0.77 | 33 | GOL |
Interfaces
1 interface between chains.
- A–B · 434 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4G4K · Structure of the Staphylococcus aureus AgrA LytTR Domain · the same entry in another collection · chain A against A, TM-score 1.00
- P0A0I7 · AlphaFold monomer V2.0 prediction for accessory gene regulator protein a (P0A0I7) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A0I7
- Elsewhere: RCSB PDB 4G4K · PDBe 4G4K · UniProt P0A0I7
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