MolNFT v1 · #92284 · protein
Crystal structure analysis of ostertagia ostertagi asp-1
4G2U · Ancylostoma-secreted protein-like protein: “Crystal structure analysis of ostertagia ostertagi asp-1”. X-ray diffraction, 2 ligands (NAG, SO4), 3 pockets (best druggability 0.61). MolNFT v1 #92284 on GenesisL1: 3D structure, binding…
- PDB
- 4G2U
- Type
- protein
- Length
- 420 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ancylostoma-secreted protein-like protein
- UniProt
- Q8T8F4
- Ligands
- NAG, SO4
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ancylostoma-secreted protein-like protein | protein | 210 | 33% helix, 21% strand | Q8T8F4 |
| B | Ancylostoma-secreted protein-like protein | protein | 210 | 31% helix, 22% strand | Q8T8F4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.61 | 0.76 | 50 | empty |
| 2 | 306 | 0.55 | 0.75 | 44 | empty |
| 3 | 51 | 0.29 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 295 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 13 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 4G2U · Crystal Structure Analysis of Ostertagia ostertagi ASP-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8T8F4
- Elsewhere: RCSB PDB 4G2U · PDBe 4G2U · UniProt Q8T8F4
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