MolNFT v1 · #92244 · protein
Crystal structure of newcastle disease virus matrix protein
4G1O: “Crystal structure of newcastle disease virus matrix protein”. X-ray diffraction, 5 pockets (best druggability 0.82). MolNFT v1 #92244 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4G1O
- Type
- protein
- Length
- 655 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein
- UniProt
- P11206
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix protein | protein | 329 | 20% helix, 43% strand | P11206 |
| B | Matrix protein | protein | 326 | 22% helix, 42% strand | P11206 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 188 | 0.82 | 0.97 | 23 | empty |
| 2 | 445 | 0.68 | 0.79 | 70 | empty |
| 3 | 216 | 0.51 | 0.76 | 37 | empty |
| 4 | 88 | 0.41 | 0.78 | 22 | empty |
| 5 | 51 | 0.29 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 2499 Ų buried · 44 hydrogen bonds · protein-protein
Compared structures
- 4G1O · Crystal structure of Newcastle disease virus matrix protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11206
- Elsewhere: RCSB PDB 4G1O · PDBe 4G1O · UniProt P11206
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