MolNFT v1 · #92239 · protein
Sortase C1 of gbs pilus island 1
4G1J · Sortase family protein: “Sortase C1 of gbs pilus island 1”. X-ray diffraction, 3 pockets (best druggability 0.65). MolNFT v1 #92239 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4G1J
- Type
- protein
- Length
- 402 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sortase family protein
- UniProt
- Q8E0S7
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sortase family protein | protein | 203 | 25% helix, 32% strand | Q8E0S7 |
| B | Sortase family protein | protein | 199 | 26% helix, 32% strand | Q8E0S7 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 555 | 0.65 | 0.76 | 78 | empty |
| 2 | 75 | 0.33 | 0.75 | 21 | empty |
| 3 | 52 | 0.31 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 387 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4G1J · Sortase C1 of GBS Pilus Island 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8E0S7
- Elsewhere: RCSB PDB 4G1J · PDBe 4G1J · UniProt Q8E0S7
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