MolNFT v1 · #92236 · protein
Crystal structure of newcastle disease virus matrix protein
4G1G: “Crystal structure of newcastle disease virus matrix protein”. X-ray diffraction, 11 pockets (best druggability 0.81). MolNFT v1 #92236 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4G1G
- Type
- protein
- Length
- 683 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein
- UniProt
- P11206
- Pockets
- 11 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix protein | protein | 329 | 22% helix, 42% strand | P11206 |
| B | Matrix protein | protein | 354 | 20% helix, 40% strand | P11206 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.81 | 0.95 | 24 | empty |
| 2 | 196 | 0.62 | 0.83 | 50 | empty |
| 3 | 321 | 0.59 | 0.77 | 39 | empty |
| 4 | 237 | 0.53 | 0.76 | 31 | empty |
| 5 | 224 | 0.51 | 0.76 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 2544 Ų buried · 44 hydrogen bonds · protein-protein
Compared structures
- 4G1G · Crystal structure of Newcastle disease virus matrix protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11206
- Elsewhere: RCSB PDB 4G1G · PDBe 4G1G · UniProt P11206
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