MolNFT v1 · #92215 · protein

Crystal structure of epiphyas postvittana takeout 1 expressed in SF9 cells

4G0S · Takeout-like protein 1: “Crystal structure of epiphyas postvittana takeout 1 expressed in SF9 cells”. X-ray diffraction, 1 ligand (MYR), 5 pockets (best druggability 0.89). MolNFT v1 #92215 on GenesisL1: 3D structure, binding sites…

PDB: 4G0S
Type: protein
Length: 438 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Takeout-like protein 1
UniProt: B5ABT1
Ligands: MYR
Pockets: 5 · best druggability 0.89

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Takeout-like protein 1	protein	219	31% helix, 47% strand	B5ABT1

Ligands and binding sites

MYR · Myristic acid · ligand · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	570	0.89	0.94	71	MYR
2	575	0.89	0.93	71	MYR
3	128	0.37	0.73	25	empty
4	67	0.28	0.73	16	empty
5	63	0.27	0.72	15	empty

Interfaces

1 interface between chains.

A–B · 442 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

4G0S · Crystal Structure of Epiphyas postvittana Takeout 1 expressed in Sf9 cells · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B5ABT1
Elsewhere: RCSB PDB 4G0S · PDBe 4G0S · UniProt B5ABT1

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