MolNFT v1 · #92213 · protein
Crystal structure of arabidopsis thaliana AGO1 mid domain in complex with cmp
4G0Q · Protein argonaute 1: “Crystal structure of arabidopsis thaliana AGO1 mid domain in complex with cmp”. X-ray diffraction, 1 ligand (C5P). MolNFT v1 #92213 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4G0Q
- Type
- protein
- Length
- 147 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein argonaute 1
- UniProt
- O04379
- Ligands
- C5P
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein argonaute 1 | protein | 147 | 46% helix, 18% strand | O04379 |
Ligands and binding sites
- C5P · Cytidine-5'-monophosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4G0Q · Crystal structure of Arabidopsis thaliana AGO1 MID domain in complex with CMP · the same entry in another collection · chain A against A, TM-score 1.00
- O04379 · AlphaFold monomer V2.0 prediction for protein argonaute 1 (O04379) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O04379
- Elsewhere: RCSB PDB 4G0Q · PDBe 4G0Q · UniProt O04379
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