MolNFT v1 · #92139 · protein
Structural basis for substrate recognition by a novel legionella phosphoinositide phosphatase
4FYG · Sidf, inhibitor of growth family, member 3: “Structural basis for substrate recognition by a novel legionella phosphoinositide phosphatase”. X-ray diffraction, 1 ligand (3PT), 13 pockets (best druggability 0.64). MolNFT v1 #92139 on…
- PDB
- 4FYG
- Type
- protein
- Length
- 743 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sidf, inhibitor of growth family, member 3
- EC
- 3.1.3.67
- UniProt
- Q5ZSD5
- Ligands
- 3PT
- Pockets
- 13 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sidf, inhibitor of growth family, member 3 (EC 3.1.3.67) | protein | 743 | 52% helix, 12% strand | Q5ZSD5 |
Ligands and binding sites
- 3PT · (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 221 | 0.64 | 0.83 | 35 | empty |
| 2 | 429 | 0.61 | 0.77 | 43 | empty |
| 3 | 156 | 0.55 | 0.81 | 28 | empty |
| 4 | 97 | 0.53 | 0.83 | 23 | empty |
| 5 | 164 | 0.50 | 0.77 | 28 | empty |
Compared structures
- 4FYG · Structural basis for substrate recognition by a novel Legionella phosphoinositide… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZSD5
- Elsewhere: RCSB PDB 4FYG · PDBe 4FYG · UniProt Q5ZSD5
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