MolNFT v1 · #91956 · protein
Crystal structure of pseudomonas aeruginosa OCCK11 (opdr)
4FSP · Probable porin: “Crystal structure of pseudomonas aeruginosa OCCK11 (opdr)”. X-ray diffraction, 3 pockets (best druggability 0.64). MolNFT v1 #91956 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4FSP
- Type
- protein
- Length
- 364 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable porin
- UniProt
- Q9HY38
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 60% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable porin | protein | 364 | 1% helix, 60% strand | Q9HY38 |
Ligands and binding sites
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 595 | 0.64 | 0.76 | 64 | empty |
| 2 | 331 | 0.57 | 0.76 | 50 | empty |
| 3 | 96 | 0.36 | 0.75 | 18 | empty |
Compared structures
- 4FSP · Crystal Structure of Pseudomonas aeruginosa OccK11 (OpdR) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HY38
- Elsewhere: RCSB PDB 4FSP · PDBe 4FSP · UniProt Q9HY38
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