MolNFT v1 · #91757 · protein
Crystal structure of a putative bacterial DNA binding protein (BVU_2165) from bacteroides vulgatus atcc 8482 at 2.25 a resolution
4FMR · Uncharacterized hypothetical protein: “Crystal structure of a putative bacterial DNA binding protein (BVU_2165) from bacteroides vulgatus atcc 8482…”. X-ray diffraction, 11 pockets (best druggability 0.80). MolNFT v1 #91757 on…
- PDB
- 4FMR
- Type
- protein
- Length
- 941 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized hypothetical protein
- UniProt
- A6L2B2
- Pockets
- 11 · best druggability 0.80
Structure
x-ray diffraction · 4 distinct chains · 18% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized hypothetical protein | protein | 234 | 19% helix, 42% strand | A6L2B2 |
| B | Uncharacterized hypothetical protein | protein | 237 | 18% helix, 42% strand | A6L2B2 |
| C | Uncharacterized hypothetical protein | protein | 234 | 17% helix, 42% strand | A6L2B2 |
| D | Uncharacterized hypothetical protein | protein | 236 | 19% helix, 42% strand | A6L2B2 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 739 | 0.80 | 0.84 | 95 | empty |
| 2 | 643 | 0.78 | 0.84 | 88 | empty |
| 3 | 144 | 0.61 | 0.84 | 24 | empty |
| 4 | 201 | 0.59 | 0.81 | 38 | empty |
| 5 | 131 | 0.55 | 0.82 | 25 | empty |
Interfaces
4 interfaces between chains.
- C–D · 4373 Ų buried · 49 hydrogen bonds · protein-protein
- A–B · 4359 Ų buried · 53 hydrogen bonds · protein-protein
- A–C · 766 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 15 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 24 modified (engineered).
Compared structures
- 4FMR · Crystal structure of a Putative bacterial DNA binding protein (BVU_2165) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L2B2
- Elsewhere: RCSB PDB 4FMR · PDBe 4FMR · UniProt A6L2B2
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