MolNFT v1 · #91721 · protein
Crystal structure of amylosucrase double mutant A289P-F290L from neisseria polysaccharea
4FLR: “Crystal structure of amylosucrase double mutant A289P-F290L from neisseria polysaccharea”. X-ray diffraction, 5 pockets (best druggability 0.76). MolNFT v1 #91721 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4FLR
- Type
- protein
- Length
- 628 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amylosucrase
- EC
- 2.4.1.4
- UniProt
- Q9ZEU2
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Amylosucrase (EC 2.4.1.4) | protein | 628 | 43% helix, 16% strand | Q9ZEU2 |
Ligands and binding sites
- GOL · Glycerol · additive · 18 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 455 | 0.76 | 0.84 | 58 | TRS, GOL |
| 2 | 50 | 0.71 | 0.99 | 19 | empty |
| 3 | 198 | 0.60 | 0.82 | 33 | GOL |
| 4 | 75 | 0.45 | 0.81 | 13 | GOL |
| 5 | 52 | 0.25 | 0.73 | 13 | empty |
Compared structures
- 4FLR · Crystal structure of Amylosucrase double mutant A289P-F290L from Neisseria polysaccharea · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ZEU2 · AlphaFold monomer V2.0 prediction for amylosucrase (Q9ZEU2) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZEU2
- Elsewhere: RCSB PDB 4FLR · PDBe 4FLR · UniProt Q9ZEU2
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