MolNFT v1 · #91510 · protein

Crystal structure of levan fructotransferase from arthrobacter ureafaciens

4FFF: “Crystal structure of levan fructotransferase from arthrobacter ureafaciens”. X-ray diffraction, 18 pockets (best druggability 0.77). MolNFT v1 #91510 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4FFF
Type: protein
Length: 1,916 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levan fructotransferase
EC: 4.2.2.16
UniProt: Q9KJD0
Pockets: 18 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Levan fructotransferase (EC 4.2.2.16)	protein	479	8% helix, 50% strand	Q9KJD0

Pockets

18 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1101	0.77	0.79	117	empty
2	625	0.77	0.83	61	empty
3	440	0.60	0.76	37	empty
4	270	0.59	0.78	33	empty
5	272	0.58	0.78	38	empty

Interfaces

5 interfaces between chains.

B–C · 584 Å² buried · 7 hydrogen bonds · protein-protein
B–D · 395 Å² buried · 2 hydrogen bonds · protein-protein
A–D · 303 Å² buried · 3 hydrogen bonds · protein-protein
C–D · 208 Å² buried · 0 hydrogen bonds · protein-protein
A–C · 188 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

4FFF · Crystal Structure of Levan Fructotransferase from Arthrobacter ureafaciens · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KJD0
Elsewhere: RCSB PDB 4FFF · PDBe 4FFF · UniProt Q9KJD0

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