MolNFT v1 · #91494 · protein

An X-ray structure of a putative phosphogylcerate kinase with bound ADP from francisella tularensis subsp. tularensis schu S4

4FEY · Phosphoglycerate kinase: “An X-ray structure of a putative phosphogylcerate kinase with bound ADP from francisella tularensis subsp.…”. X-ray diffraction, 1 ligand (ADP), 3 pockets (best druggability 0.53). MolNFT v1 #91494 on…

PDB: 4FEY
Type: protein
Length: 392 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoglycerate kinase
EC: 2.7.2.3
UniProt: Q5NF76
Ligands: ADP
Pockets: 3 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglycerate kinase (EC 2.7.2.3)	protein	392	41% helix, 18% strand	Q5NF76

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	145	0.53	0.80	22	empty
2	97	0.50	0.82	28	ADP
3	80	0.42	0.79	14	empty

Compared structures

4FEY · An X-ray Structure of a Putative Phosphogylcerate Kinase with Bound ADP from Francisella… · the same entry in another collection · chain A against A, TM-score 1.00
Q5NF76 · AlphaFold monomer V2.0 prediction for phosphoglycerate kinase (Q5NF76) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5NF76
Elsewhere: RCSB PDB 4FEY · PDBe 4FEY · UniProt Q5NF76

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