MolNFT v1 · #91459 · protein

Crystal structure of a similar to lipoprotein, NLP/P60 family (SAV0400) from staphylococcus aureus subsp. aureus MU50 at 2.23 a resolution

4FDY: “Crystal structure of a similar to lipoprotein, NLP/P60 family (SAV0400) from staphylococcus aureus subsp.…”. X-ray diffraction, 3 pockets (best druggability 0.47). MolNFT v1 #91459 on GenesisL1: 3D structure, binding sites and…

PDB: 4FDY
Type: protein
Length: 590 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Similar to lipoprotein, NLP/P60 family
UniProt: Q932I6
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Similar to lipoprotein, NLP/P60 family	protein	295	44% helix, 13% strand	Q932I6

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	187	0.47	0.76	25	empty
2	156	0.47	0.77	28	empty
3	93	0.35	0.74	17	empty

Interfaces

1 interface between chains.

A–B · 326 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered, oxidation).

Compared structures

4FDY · Crystal structure of a similar to lipoprotein, NLP/P60 family (SAV0400) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q932I6
Elsewhere: RCSB PDB 4FDY · PDBe 4FDY · UniProt Q932I6

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