MolNFT v1 · #91438 · protein
Crystal structure of saccharomyces cerevisiae 3-oxoacyl-[acyl-carrier- protein] reductase complexed with NADP
4FDA · 3-oxoacyl-[acyl-carrier-protein] reductase: “Crystal structure of saccharomyces cerevisiae 3-oxoacyl-[acyl-carrier- protein] reductase complexed with NADP”. X-ray diffraction, 1 ligand (NAP), 2 pockets (best druggability 0.59).…
- PDB
- 4FDA
- Type
- protein
- Length
- 243 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-[acyl-carrier-protein] reductase
- EC
- 1.1.1.100
- UniProt
- P35731
- Ligands
- NAP
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) | protein | 243 | 47% helix, 21% strand | P35731 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 256 | 0.59 | 0.79 | 33 | NAP |
| 2 | 133 | 0.47 | 0.77 | 19 | empty |
Compared structures
- 4FDA · Crystal structure of Saccharomyces cerevisiae 3-oxoacyl-[acyl-carrier-protein] reductase… · the same entry in another collection · chain A against A, TM-score 1.00
- P35731 · AlphaFold monomer V2.0 prediction for 3-oxoacyl-[acyl-carrier- protein] reductase (P35731) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35731
- Elsewhere: RCSB PDB 4FDA · PDBe 4FDA · UniProt P35731
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