MolNFT v1 · #91292 · protein
Penicillium canescens endo-1,4-beta-xylanase xyle
4F8X: “Penicillium canescens endo-1,4-beta-xylanase xyle”. X-ray diffraction, 2 ligands (NAG, BMA), 1 pocket (best druggability 0.42). MolNFT v1 #91292 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4F8X
- Type
- protein
- Length
- 335 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase
- EC
- 3.2.1.8
- UniProt
- C3VEV9
- Ligands
- NAG, BMA
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 335 | 44% helix, 19% strand | C3VEV9 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.42 | 0.76 | 30 | empty |
Modifications
Observed in the structure: 3 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
- 4F8X · Penicillium canescens endo-1,4-beta-xylanase XylE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3VEV9
- Elsewhere: RCSB PDB 4F8X · PDBe 4F8X · UniProt C3VEV9
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