MolNFT v1 · #91269 · protein
X-ray crystal structure of plycb
4F87: “X-ray crystal structure of plycb”. X-ray diffraction. MolNFT v1 #91269 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4F87
- Type
- protein
- Length
- 247 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plycb
- UniProt
- Q7Y3F3
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plycb | protein | 61 | 31% helix, 30% strand | Q7Y3F3 |
| B, C, D | Plycb | protein | 62 | 31% helix, 29% strand | Q7Y3F3 |
Ligands and binding sites
- MRD · (4R)-2-methylpentane-2,4-diol · additive · chains B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–C · 846 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 750 Ų buried · 15 hydrogen bonds · protein-protein
- A–C · 742 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 4F87 · X-ray Crystal Structure of PlyCB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Y3F3
- Elsewhere: RCSB PDB 4F87 · PDBe 4F87 · UniProt Q7Y3F3
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