MolNFT v1 · #91267 · protein
Structure analysis of geranyl diphosphate methyltransferase
4F85 · Geranyl diphosphate 2-C-methyltransferase: “Structure analysis of geranyl diphosphate methyltransferase”. X-ray diffraction, 1 pocket (best druggability 0.46). MolNFT v1 #91267 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 4F85
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Geranyl diphosphate 2-C-methyltransferase
- EC
- 2.1.1.-
- UniProt
- D3KYU3
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Geranyl diphosphate 2-C-methyltransferase (EC 2.1.1.-) | protein | 246 | 43% helix, 23% strand | D3KYU3 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.46 | 0.75 | 35 | empty |
Compared structures
- 4F85 · Structure analysis of Geranyl diphosphate methyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
- D3KYU3 · AlphaFold monomer V2.0 prediction for geranyl diphosphate 2-C-methyltransferase (D3KYU3) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3KYU3
- Elsewhere: RCSB PDB 4F85 · PDBe 4F85 · UniProt D3KYU3
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