MolNFT v1 · #9126 · DNA
The solution NMR structure of a thermally stable fapy adduct of aflatoxin B1 in an oligodeoxynucleotide duplex refined from distance restrained molecular dynamics simulated annealing, minimized average structure
1HM1 · DNA (5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3'): “The solution NMR structure of a thermally stable fapy adduct of aflatoxin B1 in an oligodeoxynucleotide…”. Solution nmr. MolNFT v1 #9126 on GenesisL1: 3D structure, binding sites…
- PDB
- 1HM1
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3'); DNA…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3') | dna | 10 | — | — |
| B | DNA (5'-D(TP*GP*AP*AP*TP*CP*AP*TP*AP*G)-3') | dna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 551 Ų buried · 36 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 1HM1 · The solution NMR structure of a thermally stable fapy adduct of aflatoxin B1 in an… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1HM1 · PDBe 1HM1
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