MolNFT v1 · #91220 · protein
Crystal structure of the yeast metacaspase YCA1
4F6O · Metacaspase-1: “Crystal structure of the yeast metacaspase YCA1”. X-ray diffraction, 1 ligand (DFH), 1 pocket (best druggability 0.42). MolNFT v1 #91220 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4F6O
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metacaspase-1
- EC
- 3.4.22.-
- UniProt
- Q08601
- Ligands
- DFH
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metacaspase-1 (EC 3.4.22.-) | protein | 268 | 26% helix, 23% strand | Q08601 |
Ligands and binding sites
- DFH · 1,1-diphenylethanol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.42 | 0.77 | 20 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08601
- Elsewhere: RCSB PDB 4F6O · PDBe 4F6O · UniProt Q08601
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