MolNFT v1 · #91134 · protein
The X-ray structural of fimxeal-C-di-gmp-pilz complexes from xanthomonas campestris
4F48 · Putative uncharacterized protein: “The X-ray structural of fimxeal-C-di-gmp-pilz complexes from xanthomonas campestris”. X-ray diffraction, 1 ligand (C2E), 1 pocket (best druggability 0.73). MolNFT v1 #91134 on GenesisL1: 3D…
- PDB
- 4F48
- Type
- protein
- Length
- 338 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein; Type IV fimbriae assembly protein
- UniProt
- Q8P8F1, Q8PBU4
- Ligands
- C2E
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 241 | 47% helix, 22% strand | Q8P8F1 |
| B | Type IV fimbriae assembly protein | protein | 97 | 22% helix, 35% strand | Q8PBU4 |
Ligands and binding sites
- C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 691 | 0.73 | 0.80 | 65 | C2E |
Interfaces
1 interface between chains.
- A–B · 586 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 4F48 · The X-ray structural of FimXEAL-c-di-GMP-PilZ complexes from Xanthomonas campestris · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8P8F1
- Every structure of UniProt Q8PBU4
- Elsewhere: RCSB PDB 4F48 · PDBe 4F48 · UniProt Q8P8F1 · UniProt Q8PBU4
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