MolNFT v1 · #90989 · protein
Crystal structure of solute binding protein of ABC transporter from rhodopseudomonas palustris HAA2 RPB_2270 in complex with P- hydroxybenzoic acid
4F06 · Extracellular ligand-binding receptor: “Crystal structure of solute binding protein of ABC transporter from rhodopseudomonas palustris HAA2 RPB_2270…”. X-ray diffraction, 3 ligands (PHB, NA, SO4), 1 pocket (best druggability 0.37).…
- PDB
- 4F06
- Type
- protein
- Length
- 368 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular ligand-binding receptor
- UniProt
- Q2IXT5
- Ligands
- PHB, NA, SO4
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular ligand-binding receptor | protein | 368 | 44% helix, 26% strand | Q2IXT5 |
Ligands and binding sites
- PHB · P-hydroxybenzoic acid · ligand · 2 copies · chains A
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.37 | 0.77 | 19 | empty |
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 4F06 · Crystal structure of solute binding protein of ABC transporter from Rhodopseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2IXT5
- Elsewhere: RCSB PDB 4F06 · PDBe 4F06 · UniProt Q2IXT5
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