MolNFT v1 · #90942 · protein

Crystal structure of mccf-like protein from streptococcus pneumoniae in complex with AMP

4EYS · Mccc family protein: “Crystal structure of mccf-like protein from streptococcus pneumoniae in complex with AMP”. X-ray diffraction, 2 ligands (AMP, SO4), 2 pockets (best druggability 0.60). MolNFT v1 #90942 on GenesisL1: 3D…

PDB: 4EYS
Type: protein
Length: 343 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mccc family protein
UniProt: Q97SY1
Ligands: AMP, SO4
Pockets: 2 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mccc family protein	protein	343	38% helix, 20% strand	Q97SY1

Ligands and binding sites

AMP · Adenosine monophosphate · ligand · chains A
SO4 · Sulfate ion · ion · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	224	0.60	0.80	33	AMP, ACT
2	63	0.32	0.76	13	empty

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

4EYS · Crystal structure of MccF-like protein from Streptococcus pneumoniae in complex with AMP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97SY1
Elsewhere: RCSB PDB 4EYS · PDBe 4EYS · UniProt Q97SY1

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