MolNFT v1 · #90692 · protein
Structure of saccharomyces cerevisiae invertase
4EQV · Invertase 2: “Structure of saccharomyces cerevisiae invertase”. X-ray diffraction, 20 pockets (best druggability 0.80). MolNFT v1 #90692 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4EQV
- Type
- protein
- Length
- 4,072 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Invertase 2
- EC
- 3.2.1.26
- UniProt
- P00724
- Pockets
- 20 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Invertase 2 (EC 3.2.1.26) | protein | 509 | 2% helix, 48% strand | P00724 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1090 | 0.80 | 0.82 | 100 | empty |
| 2 | 713 | 0.78 | 0.82 | 78 | empty |
| 3 | 70 | 0.74 | 0.98 | 24 | empty |
| 4 | 70 | 0.74 | 0.98 | 25 | empty |
| 5 | 73 | 0.73 | 0.97 | 25 | empty |
Interfaces
8 interfaces between chains.
- C–D · 2768 Ų buried · 52 hydrogen bonds · protein-protein
- A–B · 2761 Ų buried · 48 hydrogen bonds · protein-protein
- E–F · 1530 Ų buried · 16 hydrogen bonds · protein-protein
- G–H · 1433 Ų buried · 22 hydrogen bonds · protein-protein
- C–E · 818 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00724
- Elsewhere: RCSB PDB 4EQV · PDBe 4EQV · UniProt P00724
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