MolNFT v1 · #90642 · protein
Crystal structure of autolysin repeat domains from staphylococcus epidermidis
4EPC · N-acetylmuramoyl-L-alanine amidase: “Crystal structure of autolysin repeat domains from staphylococcus epidermidis”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #90642 on GenesisL1: 3D structure, binding sites…
- PDB
- 4EPC
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-acetylmuramoyl-L-alanine amidase
- EC
- 3.5.1.28
- UniProt
- O33635
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) | protein | 152 | 6% helix, 55% strand | O33635 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.32 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 11 modified (methylation).
Compared structures
- 4EPC · Crystal structure of Autolysin repeat domains from Staphylococcus epidermidis · the same entry in another collection · chain A against A, TM-score 1.00
- O33635 · AlphaFold monomer V2.0 prediction for bifunctional autolysin (O33635) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O33635
- Elsewhere: RCSB PDB 4EPC · PDBe 4EPC · UniProt O33635
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