MolNFT v1 · #90605 · protein
Crystal structure of a phosphoglycerate mutase GPM1 from mycobacterium leprae
4EO9 · 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase: “Crystal structure of a phosphoglycerate mutase GPM1 from mycobacterium leprae”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.60). MolNFT v1 #90605 on…
- PDB
- 4EO9
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
- EC
- 5.4.2.1
- UniProt
- B8ZT86
- Ligands
- CL
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) | protein | 240 | 45% helix, 12% strand | B8ZT86 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 329 | 0.60 | 0.78 | 35 | empty |
Compared structures
- 4EO9 · Crystal structure of a phosphoglycerate mutase gpm1 from Mycobacterium leprae · the same entry in another collection · chain A against A, TM-score 1.00
- B8ZT86 · AlphaFold monomer V2.0 prediction for 2,3-bisphosphoglycerate- dependent phosphoglycerate… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8ZT86
- Elsewhere: RCSB PDB 4EO9 · PDBe 4EO9 · UniProt B8ZT86
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