MolNFT v1 · #90395 · protein
Crystal structure of a DUF4466 family protein (PARMER_03218) from parabacteroides merdae atcc 43184 at 2.00 a resolution
4EI0 · Uncharacterized hypothetical protein: “Crystal structure of a DUF4466 family protein (PARMER_03218) from parabacteroides merdae atcc 43184 at 2.00 a…”. X-ray diffraction, 4 pockets (best druggability 0.42). MolNFT v1 #90395 on…
- PDB
- 4EI0
- Type
- protein
- Length
- 603 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized hypothetical protein
- UniProt
- A7AIG2
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized hypothetical protein | protein | 301 | 9% helix, 43% strand | A7AIG2 |
| B | Uncharacterized hypothetical protein | protein | 302 | 9% helix, 47% strand | A7AIG2 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.42 | 0.74 | 29 | empty |
| 2 | 158 | 0.42 | 0.74 | 29 | empty |
| 3 | 97 | 0.39 | 0.76 | 18 | empty |
| 4 | 97 | 0.37 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 520 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 4EI0 · Crystal structure of a DUF4466 family protein (PARMER_03218) from Parabacteroides merdae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7AIG2
- Elsewhere: RCSB PDB 4EI0 · PDBe 4EI0 · UniProt A7AIG2
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