MolNFT v1 · #90088 · DNA
Lambda-[RU(TAP)2(DPPZ{ME2}2)]2+ bound to tcggcgccga at high resolution
4E8S · 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3': “Lambda-[RU(TAP)2(DPPZ{ME2}2)]2+ bound to tcggcgccga at high resolution”. X-ray diffraction, 3 ligands (RML, BA, CL). MolNFT v1 #90088 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4E8S
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'
- Ligands
- RML, BA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' | dna | 10 | — | — |
Ligands and binding sites
- RML · (11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+) · ligand · chains A
- BA · Barium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4E8S · Lambda-[Ru(TAP)2(dppz{Me2}2)]2+ bound to TCGGCGCCGA at high resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4E8S · PDBe 4E8S
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.