MolNFT v1 · #89932 · protein

Crystal structure of a oxidoreductase from rhizobium etli cfn 42

4E3Z · Putative oxidoreductase protein: “Crystal structure of a oxidoreductase from rhizobium etli cfn 42”. X-ray diffraction, 5 pockets (best druggability 0.56). MolNFT v1 #89932 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 4E3Z
Type: protein
Length: 459 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative oxidoreductase protein
UniProt: Q2K3F6
Pockets: 5 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative oxidoreductase protein	protein	231	50% helix, 17% strand	Q2K3F6
B	Putative oxidoreductase protein	protein	228	50% helix, 17% strand	Q2K3F6

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	327	0.56	0.76	41	empty
2	278	0.53	0.75	40	empty
3	51	0.44	0.84	23	empty
4	71	0.32	0.74	16	empty
5	54	0.25	0.72	13	empty

Interfaces

1 interface between chains.

A–B · 1627 Å² buried · 19 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 14 modified (engineered).

Compared structures

4E3Z · Crystal Structure of a oxidoreductase from Rhizobium etli CFN 42 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2K3F6
Elsewhere: RCSB PDB 4E3Z · PDBe 4E3Z · UniProt Q2K3F6

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